RMI scan for Invertabrates and small Vertébrates (Fish, Amphibians, Reptiles, Birds)

The Inselberg camp was established in 1986. It owes its name to the 411-m asl granite hill overtopping it. This site is ca 8 km North of the Arataye river. The camp itself is an ensemble of traditional ’carbets’, including one for the laboratory and one for the kitchen. The maximum housing capacity is 20 people.

Research Infrastructure. Biology Green house Description : Infrastructure dedicated to living animals under controlled environment and vegetals cultures for teachings and Alpine garden Collections and researches. Users : Researchers ans PhD/trainees, Alpine Garden Staff.

The site of Qualiagro is part of the French national network SOERE PRO (System of Observation and Experimentation for Environmental Research on Organic Residue Recycling). The objectives of QualiAgro are to characterize the agronomic value of urban waste composts and their environmental impacts, in a long-term field trials and related laboratory characterization of the residues. The experimental site (48.90°N and 1.97°E) is located in Feucherolles France (175 m.a.s.l.) with a modified oceanic climate. The soil is a typical Luvisol on loess of the Paris Basin. It has been initiated in 1998 (INRA-Veolia partnership). It is structured as a complete randomized block design (4 replicates, 450m²/plots) on a total surface of 6 ha and include 5 organic treatments: 3 urban composts - a co-compost of Green Waste and Sludge (GWS), a Biowaste compost (BIOW) and a municipal solid waste compost (MSW) - , 1 reference organic amendment not composted - a farmyard manure (FYM)- and the control - without organic input. Amendments are applied every 2 years on wheat stubble with an objective of 4 t C ha-1. Additionally, the different treatments received 2 levels of additional mineral nitrogen: low mineral N or optimum mineral N. The field is managed in conventional wheat-maize rotation. Site and plots are equipped for continuous monitoring of meteorological data, soil temperature and humidity. One plot of each treatment is equipped with wick lysimeters at 2 depths (0.45 m and 1 m). At the end of 2014, automatics chambers for N2O and CO2 emission survey will be settled, in order to assess greenhouse gas emissions related to composts and manure use. A Large set of variables mainly including physico-chemical characteristics, are monitored on different compartments of the agro-system (composts, soils, plants, water leaching). For example composts quality, crop yields and grain and crop residues analytical characteristics , main soil analytical characteristics per layer , the chemical composition of soil solution (collected with lysimeters), biological communities (microfauna and macrofauned sampling, microbial biomass ) and activities (enzymatic activities, mineralization of organic matter). Data will be stored in a common database specifically developed for the SOERE PRO network and connected with the other SOERE. Soil and plant samples are kept in collection and available for further measurements.

This technical platform has been set up to allow ecologists to perform large-scale analysis of environmental DNA via a metabarcoding approach. DNA metabarcoding refers to high throughput DNA-based identification of multiple species from environmental DNA. The main applications consist in diet analysis from feces, in biodiversity assessment using soil or water samples, and in palaeo-environment reconstruction using lake sediments and permafrost samples. The eDNA platform is composed of three pre-PCR extraction rooms dedicated to feces, soil, and ancient DNA, and to several post-PCR rooms dedicated to the purification and the titration of PCR products. The next generation sequencing on Illumina platforms (HiSeq or MiSeq) is outsourced. The eDNA platform also possesses all the equipment that can be transported and installed in the field to allow DNA extraction straight after the sampling. The eDNA platform can provide support to: (I) Design the experiment according to the scientfic goal, and ensure data quality given the technical contraints (ii) perform large-scale DNA extractions (iii) perform large-scale DNA amplifications (iv) outsource DNA sequencing to a company having developped protocols ensuring high quality amplicon sequencing from eDNA samples (v) analyze raw sequences to produce a contengency table that will be analyzed later on by the prosecutor (vi) help discussing the scientific results with regards to the possible pitfalls of the metabarcoding approach

The Nouragues Ecological Research Station is a scientific station managed by Centre National de la Recherche Scientifique. It is located at the heart of a tropical rain forest, in the Nouragues Natural Reserve, French Guiana. It is a privileged equipment for the study of the functioning of tropical forests and their biodiversity. The Nouragues station is organized around two permanent camps (Inselberg camp and Pararé camp), 8 km away from each other. These two sites are equipped to welcome scientists from a few days to several months.

The COPAS project (Canopy Operating Permanent Acces System) is a canopy-access system of a novel type. Three 45-m poles have been set up spaced about 180 m from each other in a triangular shape. They are linked through cables above the canopy. A one-person seat is hung to the system and motors permit the passenger to travel in three dimensions of space. The three towers represent a total footprint of ca. 1.5 ha. (Forecast date of operation : 2014)

Capsis is a simulation platform for forestry growth and dynamics models. It is a tool for forest scientists, forest managers and education and has been developed in the AMAP laboratory since 1999. Scientists who designed a forestry model may build a simulator in Capsis with the help of a developer according to the Capsis charter. This charter is accepted by all members and defines clear participation rules. It states that the software kernel is free software and that all the source codes for all the models are shared by all the Capsis modellers, an efficient way to promote mutualization between modellers.

UMS BBEES provides the CNRS and the National Museum of Natural History’s research units and researchers with technical and scientific supports to structure, perpetuate or pool their databases. Its interventions result in advices or direct actions during several days to several months in order to relaunch or restructure databases. It benefits the environment in place at the Museum (Service du Patrimoine Naturel, Inventaire national du Patrimoine naturel, collections patrimoniales, Pôle recherche de la DSI, etc). This structure is not designed to administer databases, which remain the responsibility of the teams that produce them, or to provide them with accommodation, which may be the DSI of the Museum or other suitable structure. However, it can provide guidance on these points. To facilitate the integration of databases in national and international frameworks, the UMS BBEES offers recommendations, including: - The constitution of corpus and data processing; - The choice of tools; - Structuring data; - Metadata. These recommendations are in line with the operative standards and norms, such as the European Directive INSPIRE (2007/2 / CE of 14 March 2007) for geographical informations, or the choice of a common taxonomic repository for existing biodiversity databases (INPN, GBIF, collections databases). The issue of identification and accessibility of databases is also at the heart of the concerns of the UMS BBEES, particularly the inactive databases (for example databases developed in the framework of national programs and stored on personal computers) and bases on standby (accessible databases, but are not supplied or operated). Investigations are and will be regularly conducted with the directors of research units in order to identify all the databases produced by the units (inactive standby, developing and active), but also to anticipate and accompany the bases of development applications as part of national and international research programs. UMS BBEES gave a particular attention to the implementation of regulations concerning intellectual property in the particular field of databases. Thus, it does not facilitate the dissemination of databases that do not comply with legislation.  

The Pararé camp was created in 1995. It is located along the Arataye river, just downstream from a rapid (’saut’) that is difficult to pass by boat. The camp itself is an ensemble of traditional ’carbets’, including one for the laboratory and one for the kitchen. The maximum housing capacity is 18 people.