Pinctada margaritifera genome assembly, raw reads
Les données de séquences brutes qui ont été utilisées pour assembler le génome de l'huître perlière, Pinctada margaritfera
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Citation proposal
Vidal-Dupiol Jeremie (IFREMER). Pinctada margaritifera genome assembly, raw reads. https://services.mspdata.eu:/geonetwork/srv/api/records/0d2dda11-db53-43f5-b0d4-1acb2ca0bdc4 |
Simple
- Date ( Creation )
- 2018-06-21
- Identifier
- FR-330-715-368-00032-IFR_BIOINFO_GENOME_PINCTADA_MARGARITIFERA
- Credit
- Ifremer - Unité Ressources Marines en Polynésie
Author
IFREMER
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Vidal-Dupiol Jeremie
Centre Océanologique du Pacifique - Vairao - BP 7004 - 98179 Taravao - Tahiti - Polynésie Française
Tahiti
France
- GEMET - INSPIRE themes, version 1.0 ( Theme )
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- Habitats and biotopes
- Thèmes Sextant ( Theme )
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- /Biological Environment/Bioinformatics
- Use limitation
- Restricted access
- Access constraints
- Restricted
- Use constraints
- Restricted
- Other constraints
- Metadata language
- English
- Character set
- UTF8
- Topic category
-
- Environment
N
S
E
W
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
- Distribution format
-
- ( )
- OnLine resource
- /home/ref-bioinfo/ifremer/rmpf/pmarg_genome
- Hierarchy level
- Dataset
- Statement
- Draft genome assembly produce by platanus using default parameters. The libraies used are: i) an illumina shotgun library (125pb PE, insert size 400pb, sequencing depht 150X); ii) a 3kb mate paire library (125pb PE, insert size 3000 pb, sequencing depht 50X); iii) a 10kb mate paire library (125pb PE, insert size 10000 pb, sequencing depht 15X). The shotgun library was cleaned using trimmomatic and corrected using SGA-ICE. The mate-paire libraries were cleaned and corrected using NextClip.
Metadata
- File identifier
- 0d2dda11-db53-43f5-b0d4-1acb2ca0bdc4 XML
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2019-02-11T17:21:21
- Metadata standard name
- ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
- 1.0
Point of contact
IFREMER
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Vidal-Dupiol Jeremie
Centre Océanologique du Pacifique - Vairao - BP 7004 - 98179 Taravao - Tahiti - Polynésie Française
Tahiti
France
Metadata catalogue