Pinctada margaritifera genome assembly, raw reads

Les données de séquences brutes qui ont été utilisées pour assembler le génome de l'huître perlière, Pinctada margaritfera
 
Citation proposal
Vidal-Dupiol Jeremie (IFREMER). Pinctada margaritifera genome assembly, raw reads. https://services.mspdata.eu:/geonetwork/srv/api/records/0d2dda11-db53-43f5-b0d4-1acb2ca0bdc4

Simple

Date ( Creation )
2018-06-21
Identifier
FR-330-715-368-00032-IFR_BIOINFO_GENOME_PINCTADA_MARGARITIFERA
Credit
Ifremer - Unité Ressources Marines en Polynésie

  Author

GEMET - INSPIRE themes, version 1.0 ( Theme )
  • Habitats and biotopes
Thèmes Sextant ( Theme )
  • /Biological Environment/Bioinformatics
Use limitation
Restricted access
Access constraints
Restricted
Use constraints
Restricted
Other constraints
Metadata language
English
Character set
UTF8
Topic category
  • Environment
N
S
E
W


Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo/ifremer/rmpf/pmarg_genome  
Hierarchy level
Dataset
Statement
Draft genome assembly produce by platanus using default parameters. The libraies used are: i) an illumina shotgun library (125pb PE, insert size 400pb, sequencing depht 150X); ii) a 3kb mate paire library (125pb PE, insert size 3000 pb, sequencing depht 50X); iii) a 10kb mate paire library (125pb PE, insert size 10000 pb, sequencing depht 15X). The shotgun library was cleaned using trimmomatic and corrected using SGA-ICE. The mate-paire libraries were cleaned and corrected using NextClip.

Metadata

File identifier
0d2dda11-db53-43f5-b0d4-1acb2ca0bdc4   XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2019-02-11T17:21:21
Metadata standard name
ISO 19115:2003/19139 - SEXTANT
Metadata standard version
1.0

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